HL_6C5L_126

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

6C5L|1|CA|U|839, 6C5L|1|CA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_126 not in the Motif Atlas

Homologous match to HL_6CZR_089

Geometric discrepancy: 0.292

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

6C5L|1|CA|G|838
6C5L|1|CA|U|839
6C5L|1|CA|C|840
6C5L|1|CA|U|841
6C5L|1|CA|C|848

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2