HL_6C5L_130

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_130 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3019

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6C5L|1|CA|G|1010
6C5L|1|CA|G|1011
6C5L|1|CA|U|1012
6C5L|1|CA|G|1013
6C5L|1|CA|A|1014
6C5L|1|CA|A|1015
6C5L|1|CA|A|1016
6C5L|1|CA|G|1017
6C5L|1|CA|C|1018
6C5L|1|CA|C|1019

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14 type Z

Chain CS

30S ribosomal protein S19