3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
6C5L|1|CA|C|1317
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6C5L_136 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.2023
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6C5L|1|CA|C|1314
6C5L|1|CA|U|1315
6C5L|1|CA|G|1316
6C5L|1|CA|C|1317
6C5L|1|CA|A|1318
6C5L|1|CA|A|1319
6C5L|1|CA|C|1320
6C5L|1|CA|C|1321
6C5L|1|CA|C|1322
6C5L|1|CA|G|1323

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CM
30S ribosomal protein S13
Chain CN
30S ribosomal protein S14 type Z
Chain CS
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2254 s