HL_6C5L_140

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6C5L|1|CV|C|17, 6C5L|1|CV|G|18, 6C5L|1|CV|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|CV|C|13
6C5L|1|CV|A|14
6C5L|1|CV|G|15
6C5L|1|CV|U|16
6C5L|1|CV|C|17
6C5L|1|CV|G|18
6C5L|1|CV|G|19
6C5L|1|CV|U|20
6C5L|1|CV|A|21
6C5L|1|CV|G|22

Current chains

Chain CV

E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DG

50S ribosomal protein L5