HL_6C5L_141
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C5L_141 not in the Motif Atlas
- Homologous match to HL_4WT8_216
- Geometric discrepancy: 0.1409
- The information below is about HL_4WT8_216
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6C5L|1|CV|A|31
6C5L|1|CV|U|32
6C5L|1|CV|U|33
6C5L|1|CV|G|34
6C5L|1|CV|A|35
6C5L|1|CV|A|36
6C5L|1|CV|A|37
6C5L|1|CV|A|38
6C5L|1|CV|U|39
Current chains
- Chain CV
- E-site tRNA PHE OR P-site tRNA PHE (unmodified bases)
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CI
- 30S ribosomal protein S9
- Chain CM
- 30S ribosomal protein S13
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- mRNA
- Chain CY
- Peptide chain release factor 2
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