HL_6C5L_153

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_153 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0853

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

6C5L|1|DA|C|246
6C5L|1|DA|G|247
6C5L|1|DA|G|248
6C5L|1|DA|C|249
6C5L|1|DA|G|250
6C5L|1|DA|A|251
6C5L|1|DA|G|252

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain D8

50S ribosomal protein L35

Chain DP

50S ribosomal protein L15