HL_6C5L_162

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_162 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1411

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6C5L|1|DA|C|543
6C5L|1|DA|G|544
6C5L|1|DA|C|545
6C5L|1|DA|A|547
6C5L|1|DA|A|548
6C5L|1|DA|G|549

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L13

Chain DV

50S ribosomal protein L21