HL_6C5L_171

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

6C5L|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_171 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.536

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

6C5L|1|DA|C|884
6C5L|1|DA|C|885
6C5L|1|DA|C|886
6C5L|1|DA|A|887
6C5L|1|DA|C|888
6C5L|1|DA|C|889
6C5L|1|DA|A|890
6C5L|1|DA|G|892

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19