HL_6C5L_178

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_178 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.0912

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6C5L|1|DA|G|1281
6C5L|1|DA|U|1282
6C5L|1|DA|G|1283
6C5L|1|DA|A|1284
6C5L|1|DA|G|1285
6C5L|1|DA|A|1286
6C5L|1|DA|A|1287
6C5L|1|DA|U|1288
6C5L|1|DA|C|1289

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22