HL_6C5L_182

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

6C5L|1|DA|U|1453, 6C5L|1|DA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_182 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5167

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6C5L|1|DA|C|1450|||A
6C5L|1|DA|C|1451
6C5L|1|DA|A|1452
6C5L|1|DA|U|1453
6C5L|1|DA|G|1455
6C5L|1|DA|G|1456
6C5L|1|DA|A|1457
6C5L|1|DA|C|1458
6C5L|1|DA|G|1459
6C5L|1|DA|A|1460
6C5L|1|DA|G|1461

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L17