HL_6C5L_195

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6C5L|1|DA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_195 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0874

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6C5L|1|DA|G|1949
6C5L|1|DA|G|1950
6C5L|1|DA|U|1951
6C5L|1|DA|A|1952
6C5L|1|DA|A|1953
6C5L|1|DA|G|1954
6C5L|1|DA|U|1955
6C5L|1|DA|U|1956
6C5L|1|DA|C|1957

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

Peptide chain release factor 2

Chain DO

50S ribosomal protein L14