HL_6C5L_197

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

6C5L|1|DA|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_197 not in the Motif Atlas

Homologous match to HL_7RQB_051

Geometric discrepancy: 0.5433

The information below is about HL_7RQB_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|C|2143
6C5L|1|DA|U|2144
6C5L|1|DA|C|2145
6C5L|1|DA|C|2146
6C5L|1|DA|G|2147
6C5L|1|DA|G|2148

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CK

30S ribosomal protein S11

Chain CW

Transfer RNA; tRNA