HL_6C5L_198

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

6C5L|1|DA|G|2206, 6C5L|1|DA|G|2207, 6C5L|1|DA|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_198 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1712

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6C5L|1|DA|C|2205
6C5L|1|DA|G|2206
6C5L|1|DA|G|2207
6C5L|1|DA|A|2208
6C5L|1|DA|U|2218
6C5L|1|DA|G|2219

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DD

50S ribosomal protein L2

Chain DI

50S ribosomal protein L9