HL_6C5L_201

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

6C5L|1|DA|G|2307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_201 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.453

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|G|2303
6C5L|1|DA|G|2304
6C5L|1|DA|A|2305
6C5L|1|DA|C|2306
6C5L|1|DA|G|2307
6C5L|1|DA|G|2308
6C5L|1|DA|A|2309
6C5L|1|DA|A|2310
6C5L|1|DA|A|2311
6C5L|1|DA|U|2312
6C5L|1|DA|C|2313

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5