3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUGUGGAAG
Length
10 nucleotides
Bulged bases
6C5L|1|DA|U|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6C5L_205 not in the Motif Atlas
Homologous match to HL_7RQB_059
Geometric discrepancy: 0.0986
The information below is about HL_7RQB_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40210.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
12

Unit IDs

6C5L|1|DA|C|2404
6C5L|1|DA|G|2405
6C5L|1|DA|U|2406
6C5L|1|DA|G|2407
6C5L|1|DA|U|2408
6C5L|1|DA|G|2409
6C5L|1|DA|G|2410
6C5L|1|DA|A|2411
6C5L|1|DA|A|2412
6C5L|1|DA|G|2413

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D1
50S ribosomal protein L28
Chain DP
50S ribosomal protein L15

Coloring options:


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