HL_6C5L_210

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

6C5L|1|DA|A|2660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_210 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.276

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6C5L|1|DA|C|2658
6C5L|1|DA|G|2659
6C5L|1|DA|A|2660
6C5L|1|DA|G|2661
6C5L|1|DA|A|2662
6C5L|1|DA|G|2663

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L6