HL_6C63_003

3D structure

PDB id

6C63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Mango-II Fluorescent Aptamer Bound to TO1-Biotin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGGAGAGGAGAGGAGAGGGAGA*G

Length

26 nucleotides

Bulged bases

6C63|1|C|A|12, 6C63|1|C|A|17, 6C63|1|C|A|19, 6C63|1|C|A|23

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C63|1|C|C|6
6C63|1|C|G|7
6C63|1|C|A|8
6C63|1|C|A|9
6C63|1|C|G|10
6C63|1|C|G|11
6C63|1|C|A|12
6C63|1|C|G|13
6C63|1|C|A|14
6C63|1|C|G|15
6C63|1|C|G|16
6C63|1|C|A|17
6C63|1|C|G|18
6C63|1|C|A|19
6C63|1|C|G|20
6C63|1|C|G|21
6C63|1|C|A|23
6C63|1|C|G|24
6C63|1|C|A|25
6C63|1|C|G|26
6C63|1|C|G|27
6C63|1|C|G|29
6C63|1|C|A|30
6C63|1|C|G|31
6C63|1|C|A|30
*
6C63|1|C|G|31

Current chains

Chain C

RNA (32-MER)

Nearby chains

Chain A

RNA (36-MER)

Chain B

RNA (36-MER)