HL_6CAO_008

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAO_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0906

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6CAO|1|A|C|320
6CAO|1|A|A|321
6CAO|1|A|C|322
6CAO|1|A|U|323
6CAO|1|A|G|324
6CAO|1|A|A|325
6CAO|1|A|G|326
6CAO|1|A|A|327
6CAO|1|A|C|328
6CAO|1|A|A|329
6CAO|1|A|C|330
6CAO|1|A|G|331
6CAO|1|A|G|332
6CAO|1|A|G|333

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20