HL_6CAO_027

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAO_027 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.0959

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6CAO|1|A|C|1165
6CAO|1|A|G|1166
6CAO|1|A|A|1167
6CAO|1|A|A|1168
6CAO|1|A|A|1169
6CAO|1|A|G|1171

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain B

30S ribosomal protein S2