HL_6CAP_011

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6CAP|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAP_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1003

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6CAP|1|A|C|419
6CAP|1|A|U|420
6CAP|1|A|U|421
6CAP|1|A|C|422
6CAP|1|A|G|423
6CAP|1|A|G|424

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain D

30S ribosomal protein S4