HL_6CAP_035

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6CAP|1|W|A|31
6CAP|1|W|U|32
6CAP|1|W|U|33
6CAP|1|W|G|34
6CAP|1|W|A|35
6CAP|1|W|A|36
6CAP|1|W|A|37
6CAP|1|W|A|38
6CAP|1|W|U|39

Current chains

Chain W

RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S ribosomal protein S12

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')