HL_6CAQ_013

3D structure

PDB id

6CAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAQ_013 not in the Motif Atlas

Homologous match to HL_4LFB_013

Geometric discrepancy: 0.0888

The information below is about HL_4LFB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CAQ|1|A|G|521
6CAQ|1|A|C|522
6CAQ|1|A|A|523
6CAQ|1|A|G|524
6CAQ|1|A|C|525
6CAQ|1|A|C|526
6CAQ|1|A|G7M|527
6CAQ|1|A|C|528

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')