HL_6CAR_020

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAR_020 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0663

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6CAR|1|A|C|897
6CAR|1|A|G|898
6CAR|1|A|C|899
6CAR|1|A|A|900
6CAR|1|A|A|901
6CAR|1|A|G|902

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17