3D structure

PDB id
6CAR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CAR_024 not in the Motif Atlas
Homologous match to HL_4LFB_024
Geometric discrepancy: 0.0851
The information below is about HL_4LFB_024
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6CAR|1|A|C|1076
6CAR|1|A|G|1077
6CAR|1|A|U|1078
6CAR|1|A|G|1079
6CAR|1|A|A|1080
6CAR|1|A|G|1081

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain E
30S ribosomal protein S5
Chain H
30S ribosomal protein S8

Coloring options:


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