HL_6CAR_036
3D structure
- PDB id
- 6CAR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6CAR_036 not in the Motif Atlas
- Geometric match to HL_6CAQ_034
- Geometric discrepancy: 0.0914
- The information below is about HL_6CAQ_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6CAR|1|W|A|31
6CAR|1|W|U|32
6CAR|1|W|U|33
6CAR|1|W|G|34
6CAR|1|W|A|35
6CAR|1|W|A|36
6CAR|1|W|A|37
6CAR|1|W|A|38
6CAR|1|W|U|39
Current chains
- Chain W
- RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 30S ribosomal protein S3
- Chain L
- 30S ribosomal protein S12
- Chain Y
- RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')
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