HL_6CB3_002

3D structure

PDB id

6CB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium

Experimental method

X-RAY DIFFRACTION

Resolution

1.89 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB3_002 not in the Motif Atlas

Geometric match to HL_6CB3_005

Geometric discrepancy: 0.074

The information below is about HL_6CB3_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6CB3|1|A|G|50
6CB3|1|A|G|51
6CB3|1|A|A|52
6CB3|1|A|A|53
6CB3|1|A|A|54
6CB3|1|A|C|55

Current chains

Chain A

RNA (99-MER)

Nearby chains

Chain B

RNA (99-MER)