HL_6CFJ_028

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGGCUUAGAAGCAGCCAUC

Length

20 nucleotides

Bulged bases

6CFJ|1|1A|A|1113, 6CFJ|1|1A|G|1114, 6CFJ|1|1A|A|1116, 6CFJ|1|1A|U|1124

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|1A|G|1105
6CFJ|1|1A|U|1106
6CFJ|1|1A|G|1108
6CFJ|1|1A|G|1109
6CFJ|1|1A|C|1110
6CFJ|1|1A|U|1111
6CFJ|1|1A|U|1112
6CFJ|1|1A|A|1113
6CFJ|1|1A|G|1114
6CFJ|1|1A|A|1115
6CFJ|1|1A|A|1116
6CFJ|1|1A|G|1117
6CFJ|1|1A|C|1118
6CFJ|1|1A|A|1119
6CFJ|1|1A|G|1120
6CFJ|1|1A|C|1121
6CFJ|1|1A|C|1122
6CFJ|1|1A|A|1123
6CFJ|1|1A|U|1124
6CFJ|1|1A|C|1125

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains