HL_6CFJ_054

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1042

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6CFJ|1|1A|G|2315
6CFJ|1|1A|G|2316
6CFJ|1|1A|A|2317
6CFJ|1|1A|C|2318
6CFJ|1|1A|G|2319
6CFJ|1|1A|G|2320
6CFJ|1|1A|A|2321
6CFJ|1|1A|A|2322
6CFJ|1|1A|A|2323
6CFJ|1|1A|U|2324
6CFJ|1|1A|C|2325

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5