3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGUGUGGAAG
Length
10 nucleotides
Bulged bases
6CFJ|1|1A|U|2418
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CFJ_058 not in the Motif Atlas
Homologous match to HL_7RQB_059
Geometric discrepancy: 0.0543
The information below is about HL_7RQB_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40210.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
12

Unit IDs

6CFJ|1|1A|C|2416
6CFJ|1|1A|G|2417
6CFJ|1|1A|U|2418
6CFJ|1|1A|G|2419
6CFJ|1|1A|U|2420
6CFJ|1|1A|G|2421
6CFJ|1|1A|G|2422
6CFJ|1|1A|A|2423
6CFJ|1|1A|A|2424
6CFJ|1|1A|G|2425

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L28
Chain 1P
50S ribosomal protein L15

Coloring options:


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