3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
G(5MC)UCAUAAC
Length
9 nucleotides
Bulged bases
6CFJ|1|1x|U|33
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_36427.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
37

Unit IDs

6CFJ|1|1x|G|31
6CFJ|1|1x|5MC|32
6CFJ|1|1x|U|33
6CFJ|1|1x|C|34
6CFJ|1|1x|A|35
6CFJ|1|1x|U|36
6CFJ|1|1x|A|37
6CFJ|1|1x|A|38
6CFJ|1|1x|C|39

Current chains

Chain 1x
P-site tRNA

Nearby chains

Chain 1a
Small subunit ribosomal RNA; SSU rRNA
Chain 1i
30S ribosomal protein S9
Chain 1m
30S ribosomal protein S13
Chain 1v
mRNA
Chain 1y
Transfer RNA; tRNA

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