HL_6CFJ_107

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

G(5MC)UCAUAAC

Length

9 nucleotides

Bulged bases

6CFJ|1|1x|U|33

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

6CFJ|1|1x|G|31
6CFJ|1|1x|5MC|32
6CFJ|1|1x|U|33
6CFJ|1|1x|C|34
6CFJ|1|1x|A|35
6CFJ|1|1x|U|36
6CFJ|1|1x|A|37
6CFJ|1|1x|A|38
6CFJ|1|1x|C|39

Current chains

Chain 1x

P-site tRNA

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1i

30S ribosomal protein S9

Chain 1m

30S ribosomal protein S13

Chain 1v

mRNA

Chain 1y

Transfer RNA; tRNA