HL_6CFJ_145

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6CFJ|1|2A|U|1396, 6CFJ|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_145 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1073

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6CFJ|1|2A|G|1389
6CFJ|1|2A|U|1390
6CFJ|1|2A|U|1391
6CFJ|1|2A|A|1392
6CFJ|1|2A|A|1393
6CFJ|1|2A|U|1394
6CFJ|1|2A|A|1395
6CFJ|1|2A|U|1396
6CFJ|1|2A|U|1397
6CFJ|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23