HL_6CFJ_161

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

6CFJ|1|2A|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_161 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.2008

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

6CFJ|1|2A|C|2143
6CFJ|1|2A|U|2144
6CFJ|1|2A|C|2145
6CFJ|1|2A|C|2146
6CFJ|1|2A|G|2147
6CFJ|1|2A|G|2148

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2k

30S ribosomal protein S11

Chain 2y

Transfer RNA; tRNA