HL_6CFJ_231

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

6CFJ|1|2A|A|1452, 6CFJ|1|2A|U|1453, 6CFJ|1|2A|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_231 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.28

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6CFJ|1|2A|C|1450|||A
6CFJ|1|2A|C|1451
6CFJ|1|2A|A|1452
6CFJ|1|2A|U|1453
6CFJ|1|2A|G|1455
6CFJ|1|2A|G|1456
6CFJ|1|2A|A|1457
6CFJ|1|2A|C|1458
6CFJ|1|2A|G|1459
6CFJ|1|2A|A|1460
6CFJ|1|2A|G|1461

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17