HL_6CFJ_232

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

6CFJ|1|2A|C|1493, 6CFJ|1|2A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_232 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3532

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6CFJ|1|2A|G|1491
6CFJ|1|2A|G|1492
6CFJ|1|2A|C|1493
6CFJ|1|2A|A|1494
6CFJ|1|2A|A|1495
6CFJ|1|2A|A|1496
6CFJ|1|2A|U|1497
6CFJ|1|2A|C|1498
6CFJ|1|2A|C|1499

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2