HL_6CFK_036

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6CFK|1|1A|U|1442, 6CFK|1|1A|U|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_036 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0446

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6CFK|1|1A|G|1435
6CFK|1|1A|U|1436
6CFK|1|1A|U|1437
6CFK|1|1A|A|1438
6CFK|1|1A|A|1439
6CFK|1|1A|U|1440
6CFK|1|1A|A|1441
6CFK|1|1A|U|1442
6CFK|1|1A|U|1443
6CFK|1|1A|C|1444

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23