3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUGCAACCCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CFK_100 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.0763
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6CFK|1|1a|C|1314
6CFK|1|1a|U|1315
6CFK|1|1a|G|1316
6CFK|1|1a|C|1317
6CFK|1|1a|A|1318
6CFK|1|1a|A|1319
6CFK|1|1a|C|1320
6CFK|1|1a|C|1321
6CFK|1|1a|C|1322
6CFK|1|1a|G|1323

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1m
30S ribosomal protein S13
Chain 1n
30S ribosomal protein S14 type Z
Chain 1s
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1687 s