HL_6CFK_111

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_111 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0394

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

6CFK|1|2A|C|246
6CFK|1|2A|G|247
6CFK|1|2A|G|248
6CFK|1|2A|C|249
6CFK|1|2A|G|250
6CFK|1|2A|A|251
6CFK|1|2A|G|252

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15