HL_6CFK_116

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6CFK|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_116 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.05

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CFK|1|2A|G|382
6CFK|1|2A|U|383
6CFK|1|2A|U|384
6CFK|1|2A|C|385
6CFK|1|2A|G|386
6CFK|1|2A|U|387
6CFK|1|2A|G|388
6CFK|1|2A|G|389
6CFK|1|2A|A|390
6CFK|1|2A|G|391
6CFK|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15