HL_6CFK_130

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_130 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5131

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

6CFK|1|2A|C|884
6CFK|1|2A|C|885
6CFK|1|2A|C|886
6CFK|1|2A|A|887
6CFK|1|2A|C|888
6CFK|1|2A|C|889
6CFK|1|2A|A|890
6CFK|1|2A|G|892

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13