HL_6CFK_133

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGGUGGCUUAGAAGCAGCCAUCCU

Length

24 nucleotides

Bulged bases

6CFK|1|2A|A|1067, 6CFK|1|2A|G|1068, 6CFK|1|2A|G|1071, 6CFK|1|2A|C|1072, 6CFK|1|2A|U|1078

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|A|1057
6CFK|1|2A|G|1058
6CFK|1|2A|G|1059
6CFK|1|2A|U|1060
6CFK|1|2A|G|1062
6CFK|1|2A|G|1063
6CFK|1|2A|C|1064
6CFK|1|2A|U|1065
6CFK|1|2A|U|1066
6CFK|1|2A|A|1067
6CFK|1|2A|G|1068
6CFK|1|2A|A|1069
6CFK|1|2A|A|1070
6CFK|1|2A|G|1071
6CFK|1|2A|C|1072
6CFK|1|2A|A|1073
6CFK|1|2A|G|1074
6CFK|1|2A|C|1075
6CFK|1|2A|C|1076
6CFK|1|2A|A|1077
6CFK|1|2A|U|1078
6CFK|1|2A|C|1079
6CFK|1|2A|C|1080
6CFK|1|2A|U|1081

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25