HL_6CFK_160

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_160 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3474

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

6CFK|1|2A|G|2302
6CFK|1|2A|G|2303
6CFK|1|2A|G|2304
6CFK|1|2A|A|2305
6CFK|1|2A|C|2306
6CFK|1|2A|G|2307
6CFK|1|2A|G|2308
6CFK|1|2A|A|2309
6CFK|1|2A|A|2310
6CFK|1|2A|A|2311
6CFK|1|2A|U|2312
6CFK|1|2A|C|2313
6CFK|1|2A|C|2314

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5