3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGUGUGGAAG
Length
10 nucleotides
Bulged bases
6CFK|1|2A|U|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CFK_164 not in the Motif Atlas
Homologous match to HL_7RQB_059
Geometric discrepancy: 0.0703
The information below is about HL_7RQB_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40210.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
12

Unit IDs

6CFK|1|2A|C|2404
6CFK|1|2A|G|2405
6CFK|1|2A|U|2406
6CFK|1|2A|G|2407
6CFK|1|2A|U|2408
6CFK|1|2A|G|2409
6CFK|1|2A|G|2410
6CFK|1|2A|A|2411
6CFK|1|2A|A|2412
6CFK|1|2A|G|2413

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2P
50S ribosomal protein L15

Coloring options:


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