HL_6CFK_184

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_184 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0789

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6CFK|1|2a|C|320
6CFK|1|2a|A|321
6CFK|1|2a|C|322
6CFK|1|2a|U|323
6CFK|1|2a|G|324
6CFK|1|2a|A|325
6CFK|1|2a|G|326
6CFK|1|2a|A|327
6CFK|1|2a|C|328
6CFK|1|2a|A|329
6CFK|1|2a|C|330
6CFK|1|2a|G|331
6CFK|1|2a|G|332
6CFK|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20