HL_6CFL_114

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6CFL|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_114 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0611

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CFL|1|2A|G|382
6CFL|1|2A|U|383
6CFL|1|2A|U|384
6CFL|1|2A|C|385
6CFL|1|2A|G|386
6CFL|1|2A|U|387
6CFL|1|2A|G|388
6CFL|1|2A|G|389
6CFL|1|2A|A|390
6CFL|1|2A|G|391
6CFL|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15