HL_6CHR_004

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGCCCUUCAAUUGGAGGUGCCA

Length

22 nucleotides

Bulged bases

6CHR|1|A|U|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CHR|1|A|U|125
6CHR|1|A|G|126
6CHR|1|A|C|127
6CHR|1|A|C|128
6CHR|1|A|C|129
6CHR|1|A|U|130
6CHR|1|A|U|131
6CHR|1|A|C|132
6CHR|1|A|A|133
6CHR|1|A|A|134
6CHR|1|A|U|135
6CHR|1|A|U|136
6CHR|1|A|G|137
6CHR|1|A|G|138
6CHR|1|A|A|139
6CHR|1|A|G|140
6CHR|1|A|G|141
6CHR|1|A|U|142
6CHR|1|A|G|143
6CHR|1|A|C|144
6CHR|1|A|C|145
6CHR|1|A|A|146

Current chains

Chain A

RNA (621-MER)

Nearby chains