HL_6CHR_007
3D structure
- PDB id
- 6CHR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UCCUUUUUAUG
- Length
- 11 nucleotides
- Bulged bases
- 6CHR|1|A|C|254, 6CHR|1|A|C|255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6CHR_007 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.3723
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6CHR|1|A|U|253
6CHR|1|A|C|254
6CHR|1|A|C|255
6CHR|1|A|U|256
6CHR|1|A|U|257
6CHR|1|A|U|258
6CHR|1|A|U|259
6CHR|1|A|U|260
6CHR|1|A|A|261
6CHR|1|A|U|262
6CHR|1|A|G|263
Current chains
- Chain A
- RNA (621-MER)
Nearby chains
- Chain B
- RNA (5'-R(P*UP*GP*UP*UP*UP*AP*UP*UP*AP*AP*AP*AP*A)-3')
Coloring options: