HL_6CZR_012

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6CZR|1|1A|G|352, 6CZR|1|1A|A|353, 6CZR|1|1A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.109

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6CZR|1|1A|G|350
6CZR|1|1A|U|351
6CZR|1|1A|G|352
6CZR|1|1A|A|353
6CZR|1|1A|A|354
6CZR|1|1A|A|355
6CZR|1|1A|G|356
6CZR|1|1A|C|357
6CZR|1|1A|C|358

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24