HL_6CZR_034

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6CZR|1|1A|G|1370, 6CZR|1|1A|U|1374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_034 not in the Motif Atlas

Geometric match to HL_4WF9_033

Geometric discrepancy: 0.1271

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6CZR|1|1A|G|1369
6CZR|1|1A|G|1370
6CZR|1|1A|U|1371
6CZR|1|1A|C|1372
6CZR|1|1A|G|1373
6CZR|1|1A|U|1374
6CZR|1|1A|C|1375

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22