3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
6CZR|1|1A|U|1441, 6CZR|1|1A|U|1442
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CZR_036 not in the Motif Atlas
Homologous match to HL_7RQB_036
Geometric discrepancy: 0.1196
The information below is about HL_7RQB_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69023.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

6CZR|1|1A|G|1434
6CZR|1|1A|U|1435
6CZR|1|1A|U|1436
6CZR|1|1A|A|1437
6CZR|1|1A|A|1438
6CZR|1|1A|U|1439
6CZR|1|1A|A|1440
6CZR|1|1A|U|1441
6CZR|1|1A|U|1442
6CZR|1|1A|C|1443

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1X
50S ribosomal protein L23

Coloring options:


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