HL_6CZR_061

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

6CZR|1|1A|G|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_061 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3382

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

6CZR|1|1A|C|2538
6CZR|1|1A|U|2539
6CZR|1|1A|G|2540
6CZR|1|1A|A|2541
6CZR|1|1A|A|2542
6CZR|1|1A|G|2543
6CZR|1|1A|A|2544
6CZR|1|1A|A|2545
6CZR|1|1A|G|2546
6CZR|1|1A|G|2547

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6